snakefmt

Format Snakemake files. More information: https://github.com/snakemake/snakefmt.

• Format a specific Snakefile:

snakefmt path/to/snakefile

• Format all Snakefiles recursively in a specific directory:

snakefmt path/to/directory

• Format a file using a specific configuration file:

snakefmt --config path/to/config.toml path/to/snakefile

• Format a file using a specific maximum line length:

snakefmt --line-length 100 path/to/snakefile

• Display the changes that would be performed without performing them (dry-run):

snakefmt --diff path/to/snakefile