nf-core

The nf-core framework tools, to create, check and develop best-practice guidelines for Nextflow. More information: https://nf-co.re/docs/nf-core-tools.

  • List existing pipelines on nf-core:

nf-core list

  • Create a new pipeline skeleton:

nf-core create

  • Lint the pipeline code:

nf-core lint path/to/directory

  • Bump software versions in pipeline recipe:

nf-core bump-version path/to/directory new_version

  • Launch an nf-core pipeline:

nf-core launch pipeline_name

  • Download an nf-core pipeline for offline use:

nf-core download pipeline_name

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